rs230533421 SNP Detail

Summary

• ID
  rs230533421
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCGAGC GCACGGCGCG
  CCCACGTAGC GCAAGTTGCC GGGTGGTTTT GAGGTGAGGC TCCGGAGGGC ATTTCCACCG
  AGCCCGGCCC CGCCCGTCAA CCGCTCGCCG CGTGCCCAGC CGCCACCCCG CGGCCCGCGC
  GCCCGCGCTC ACCTGCTCGC CCTCGTCCTG CGGCCGCCGG CGCCGCGGGC TCGCCCCGTG
  S
  TCCGGCTCCT CAACCCGCCC GGCCGGCGCC GCCCCGTCCT CGTCGCACTC CCCGCCGGCG
  CTGCCGGCGC CGCCCCGCAG CAGCTTCCTG GCCGAGCACA TCCCACCGCC GACTCCGGCC
  GCCCGCACGG CTGCCGCTGG CCACACCGGG ACTCCCGACG CACACGGGAA TCCTTAGAAG
  CGCGCCCGCC GGCCTGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss359650141	MGP_WTSI_3_127599000	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	C	G	G	C	C	G	C	C	C	C	G	G	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs230533421					SNP	G	G	C	C	G	G	C	C	G	C	C	C	C	G	G	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359650141	MGP_WTSI_3_127599000	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	Coding-NonSynonymous
Rr398009	regulatory region 398009	191 bp upstream
Rr584895	regulatory region 584895	1775 bp distal
Rr584896	regulatory region 584896	63 bp distal
Rr584897	regulatory region 584897	196 bp proximal
Tssr35606	transcription start site region 35606	1474 bp upstream
Tssr35607	transcription start site region 35607	569 bp upstream
Tssr35608	transcription start site region 35608	138 bp downstream
Tssr35609	transcription start site region 35609	165 bp downstream
Tssr35610	transcription start site region 35610	189 bp downstream