rs230534595 SNP Detail

Summary

• ID
  rs230534595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTAGAAG AGGCTGACTG
  GAAGCTATGA TTCTCCTGCC TCCGTCTTCT GAGTGCTGGC CGGACAGGCA TTGCTACCAA
  GCATTGCCGT GCTACGTTCT GCTCAGTGTC TGCTGCCCAA ACTGAATAGA TGCCTCAGTG
  AGAAAATATA CAAAAACTTG TGGGCAGACT CTCCCTGATC TGGCATCATT GGAGGACTTT
  M
  CAAAACTTTA GCACACCAAC AATAGCATAT AAAAGCTGAG AACTGCATAT TTTCATTAAT
  TAGTTGACAA AGTATGTGTG TGTGTGTGTG TGTGTGTATG TGTGTGCGTG CGCGCACACG
  CGTGCACATG TGTGCATGGA GGTCAAAGGG TGACTTTTGG GACTTAGTTT TAGCATGCAC
  TTATTAGCTG GCCCTCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934556	CHEV_6_122801887	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230534595					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828828 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	821 bp proximal
Tssr58711	transcription start site region 58711	1360 bp downstream
Tssr58712	transcription start site region 58712	1279 bp downstream
Tssr58713	transcription start site region 58713	1211 bp downstream
Tssr58714	transcription start site region 58714	1066 bp upstream
Tssr62986	transcription start site region 62986	1942 bp upstream
Tssr62987	transcription start site region 62987	1816 bp upstream
Tssr62988	transcription start site region 62988	1750 bp upstream
Tssr62989	transcription start site region 62989	1590 bp upstream
Tssr62990	transcription start site region 62990	1537 bp upstream
Tssr62991	transcription start site region 62991	1508 bp upstream
Tssr62992	transcription start site region 62992	1458 bp upstream
Tssr62993	transcription start site region 62993	1365 bp upstream
Tssr62994	transcription start site region 62994	1188 bp upstream
Tssr62995	transcription start site region 62995	1134 bp upstream
Tssr62996	transcription start site region 62996	997 bp upstream
Tssr62997	transcription start site region 62997	931 bp upstream
Tssr62998	transcription start site region 62998	860 bp upstream
Tssr62999	transcription start site region 62999	807 bp upstream
Tssr63000	transcription start site region 63000	784 bp upstream
Tssr63001	transcription start site region 63001	768 bp upstream
Tssr63002	transcription start site region 63002	979 bp downstream