rs230536651 SNP Detail

Summary

• ID
  rs230536651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:30950278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGGCT GAGTGTGGTG
  ACTGATATGT GAGGTGCCCT TGCCCTGCAG ACAGGCTGAA TGTGAGCCCC AGCAGCAGAG
  GATTCTGAGA GTCAGGGTGG TGTCATGTCC TACACAGGAA GAGCCTTCAA TATTACTTTT
  TAAACGAACT TTCCCATTGC TGATATTTTG ATAAAAACCC ACACAAGGTT TAATTACATG
  Y
  CCCCTCATCC CTCTCCACAC AGTCTTGCCC ATCCCACTGG TGAATTGTTG TTGTTCTTGT
  TGTTGTTTTT TGTTATTGGT GAAAATTGTG AAATTGTTAA GGTCTCTGTT TTTGTTATTT
  ATCTCCCTAA ATCACATGGC TGCTGCATAC ATTGCAATGT TGCCCTACCA CATGTATGTT
  TTTGCAAGTT GCTTCTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388153176	MGP_WTSI_13_30858164	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230536651					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388153176	MGP_WTSI_13_30858164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30950278 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	mRNA-UTR
Rr476643	regulatory region 476643	1523 bp distal
Rr476644	regulatory region 476644	67 bp distal
Rr476645	regulatory region 476645	63 bp proximal
Rr476646	regulatory region 476646	1475 bp proximal
Tssr119109	transcription start site region 119109	1771 bp downstream
Tssr119110	transcription start site region 119110	1722 bp downstream
Tssr119111	transcription start site region 119111	1503 bp downstream
Tssr119112	transcription start site region 119112	1454 bp downstream
Tssr119113	transcription start site region 119113	1435 bp downstream
Tssr119114	transcription start site region 119114	1407 bp downstream
Tssr119115	transcription start site region 119115	116 bp downstream