rs230536741 SNP Detail

Summary

• ID
  rs230536741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCTCTG ATCTGTTGGG
  GGGAGGGGGG GAATTTAAAG AAATATTTAG TCTTTAGTAG GTCAAAAGGT CAGACACTGA
  ATGTCATCTC TTTGTAACAC ACAGGTAGCA GGTGAGAAGG GATAAAGGTC TTCACTGCTA
  CTGTTGCCAA TGGCAACAAG GATCAGAAGC CACGGAACAC GCCCACCCCC TCCCCCACCC
  Y
  CTCCCCGACC CAGGTAAATA GGAGCTGAAG CTAGTAATAG AAGCTTACAG AAATACTGGG
  GAGTCTTTCC GTGCACAGGT ATGGAAAGGG CCCAGAATAT ATTAACTGAA AAAAAAAAAA
  AACCACAAAC TGTAAATTCC AGAAAAGGTC TGTGCTTTCC TTTCCTGGAA GAAGACAGAA
  CCACACGATC CCGCAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129378	CHEV_9_98324418	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230536741					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	665 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	405 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	1637 bp distal
Rr685256	regulatory region 685256	1028 bp distal
Rr685257	regulatory region 685257	870 bp distal
Tssr2984	transcription start site region 2984	1084 bp upstream
Tssr86646	transcription start site region 86646	780 bp upstream
Tssr86647	transcription start site region 86647	863 bp upstream
Tssr86648	transcription start site region 86648	923 bp upstream
Tssr86649	transcription start site region 86649	960 bp upstream
Tssr86650	transcription start site region 86650	1307 bp upstream
Tssr86651	transcription start site region 86651	1489 bp upstream