rs230541346 SNP Detail

Summary

• ID
  rs230541346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90905373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATGCTCT CATTTGGTAG CCTCTACCCA
  GTCTTGTTGC TTCTTGCCAA AACTAATTTG TATGCTGTTA TATTTAAAAT ACCCCATTTG
  GAACTAACCT GGGAtgcgtg catgcatgcg tgcgtgcgtg cgtgcgtgcg tgcgtgcgtg
  Y
  gtgtgtgtgt gtgtTCTACC TGCTGCTTGT TACAGATTAC CACTCCCCAG AAGGATGAAG
  GATTGCATTT GTTGAGTCAA GTGTGATGCT GATGGTGGAC TCACAACTTC CCATTAGCTT
  CTCACAATGC GATCACCAAA CCTCCCAACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321608228	CHEV_5_91186540	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230541346					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90905373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1829 bp proximal
Cxcl5	C-X-C motif chemokine ligand 5	1846 bp upstream
Gm72413	predicted gene, 72413	909 bp downstream
Rr614399	regulatory region 614399	674 bp proximal
Rr614400	regulatory region 614400	1437 bp proximal
Tssr47178	transcription start site region 47178	1835 bp upstream