rs230544133 SNP Detail

Summary

• ID
  rs230544133
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:140427403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCTGCA CTCCCAAGAT
  CCCCAGTAGG CAGAAACCCC TGCCCCCCAG TTTCCCCAAA TCAGTGGCTT GTACTGGGCT
  AAAGCTAAGG AGAAACCTGC AACCTCACTG TGTCTACATT TGTCCCAGCC AACACAAAGA
  GTTAAAGAAC CTGGAGAGTA AGGAGGCCCC TGGAGAGGTC GGGTTGGTCT CTGCAAGAGG
  M
  GTTCCCTGGA GAGTGTGGGA GCTCCTTGGA GACTTGGGGA CTCCCTGAAG AGGTGGGAGT
  TCCTGGAGAC TCGTGTGGTT GCTGGAGATG TGCATAGCCC CTAAAGGAGA AGTCCACGGA
  GAGGATGGGG GCTCCCTGGA GAGGGTTAGT TCCCCCCAAA AACAGGATCT CTGGAAAAGG
  TAATGTCTGA AGAGAGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373420002	MGP_WTSI_7_148033389	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230544133					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373420002	MGP_WTSI_7_148033389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140427403 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1801 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	426 bp upstream
Gm45785	predicted gene 45785	Intron
Rr657755	regulatory region 657755	1933 bp distal
Rr657757	regulatory region 657757	1711 bp distal
Rr657758	regulatory region 657758	1537 bp distal
Rr657759	regulatory region 657759	425 bp proximal
Rr657760	regulatory region 657760	1889 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	721 bp downstream
Tssr69847	transcription start site region 69847	1923 bp downstream
Tssr69848	transcription start site region 69848	264 bp upstream
Tssr69849	transcription start site region 69849	280 bp upstream
Tssr69850	transcription start site region 69850	294 bp upstream
Tssr69851	transcription start site region 69851	311 bp upstream
Tssr69852	transcription start site region 69852	326 bp upstream
Tssr69853	transcription start site region 69853	353 bp upstream