rs230552509 SNP Detail

Summary

• ID
  rs230552509
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84705815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGAAGA CAAAGTGCGG
  AGAGCAGTAA CTTCTTAGGG TGTTCTGTTG CTTTAGTATA AAATATCTGT GTGTTCTCAA
  CAAAGCACAC AGAAGCTTAC AAAGGCTAAA AGGACCTCCC AAGAGTGGTC CCAATGGCAT
  GCAAAGAGCA CAACATAAAA ACTCCTTCAC AGCTGAGATC AAAATGGGGG GGGGGGGGGG
  A
  GGGCAGGTGT GCCCACGGGA CAATACGTAC TCTCAGGTAC TCTTCCAAAT TGTGGATAGT
  AACTGGAATA TCCTTCCCTC CTTTCTTCAA TTCAATGTTG GGAAACCCAG GCAGCGTAAA
  ATCCAATCCC AGATCTTCCA CTGAACAGCC ATTCATCGTA AGAGTTTCCA ATGCATATTG
  TAGACTCTCT TTGGTCTTTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ
ss350350792	MGP_WTSI_1_84724669	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ
rs230552509					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350350792	MGP_WTSI_1_84724669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84705815 () rs orientation: forward

Symbol	Name	Function Class
Trip12	thyroid hormone receptor interactor 12	within coordinates