rs230560887 SNP Detail

Summary

• ID
  rs230560887
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCATTCC CAGCTTTTGA
  TGTGGGCTAG GATCCAAGTT CAGGCTCTCA CTCTTGCCTA CTGAGCCGTC ACTCCAGCCC
  TGCGCTGTGC TTCTGTGCCT GTTAGTCTCT CCATTCGAAA GAAATGCAGG TCAGCTTCCA
  AACATTGACA TCCTGCTTGG GCTAAAGAGA TGGCACGTTT GTTGTCTTCC CCCCCTCCCC
  M
  CTTTTTAGAC AGAGACCCAT GTACCTCAGT TTGACCTTGA ATTTACTGTG TAGCTGAGAA
  TGACCTTGAA CTTCGATCCT CCTCTCTCCA CACCTCAGAT GCTGGATTTA CAGACATATG
  CTACCATGTC CAATCTATAC AGTACTGGGG GGACGGGGTG GGGGGAAATG TCAAATCCAA
  GGTGTCACAT ATGCTAGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352009629	MGP_WTSI_1_156907733	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs230560887					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352009629	MGP_WTSI_1_156907733	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	716 bp distal
Gm41980	predicted gene, 41980	269 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1011 bp upstream
Rr396410	regulatory region 396410	744 bp downstream
Rr420926	regulatory region 420926	1022 bp distal
Rr420927	regulatory region 420927	521 bp distal
Rr420928	regulatory region 420928	230 bp proximal
Rr420929	regulatory region 420929	1466 bp proximal
Tssr248	transcription start site region 248	1073 bp upstream
Tssr9521	transcription start site region 9521	893 bp downstream
Tssr9522	transcription start site region 9522	657 bp downstream
Tssr9523	transcription start site region 9523	1698 bp upstream
Tssr14331	transcription start site region 14331	1058 bp upstream
Tssr14332	transcription start site region 14332	1046 bp upstream
Tssr14333	transcription start site region 14333	1028 bp upstream