rs230562200 SNP Detail

Summary

• ID
  rs230562200
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20189803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTATAGA TGTGCAAATT
  CATACCCAAC ATATTTTAAG TTTATCTAGT TAAAGTGAGG ACCTGTACTT TCTACCTTTA
  AATTTAAAGT TTTCTATTAG AATTGAAAAG GAGAAAAATT GAAAGGGAAA AAAAACCTGT
  TAGTCACTTC AGACTCACAT CCTGTTGGTA CAGCATATAT ATTTTTGTAT TAAAAGGGAA
  K
  CGTAGAACAA AATGTCTTGT CCTCACTATG AGCTTGTATT CTAGATTAGC CCTAACTGGG
  ATAGTTGGTA CTGTTACGCA ATAAAGGACC TTTAAAGACT TACCAGTTTG CATTTTTTGT
  GTGATTCTAA CCAAATTCAG GGTAGTGTGC TGGGAAGGAT GTCTCTAAAG TCGTTTTTAG
  TAAACAGCTG AGATTTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379649414	MGP_WTSI_10_20033863	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230562200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379649414	MGP_WTSI_10_20033863	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20189803 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	1208 bp upstream
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	730 bp distal
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	1887 bp distal
Gm67769	predicted gene, 67769	within coordinates
Tssr92593	transcription start site region 92593	1657 bp downstream
Tssr92594	transcription start site region 92594	1565 bp downstream
Tssr92595	transcription start site region 92595	1539 bp downstream
Tssr92596	transcription start site region 92596	1518 bp downstream
Tssr92597	transcription start site region 92597	1081 bp downstream
Tssr96944	transcription start site region 96944	1779 bp upstream