rs230565287 SNP Detail

Summary

• ID
  rs230565287
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGATCT GCGGGTTTAG
  CGTAGATGGC CTTGTGAGCA TTTCTTGAGA ACTTGGGTTG TGCACGTGGG GGGAGGTATT
  GTTTTAGTCC TAGGCTGTGG TCAGATGCAA TTTTGGGGCC CAGCGATGCA AGTCGTGTGC
  CGCGACCGTT TAGTAACCTT CCCTGCGTCC CCCAACTCCC CACCCGTCCC ACCCTTTTCT
  A
  CCCGGCTTGC AGCTGCGAGC TGGAACGTAA CTCTTTTTGC TCCAACGGAA GCCAGAACTT
  ATGTCCTGCC CTGGAGTGGG TTGAAGAGTG GGGGGATGGG CGGAAAGGAA GACAGTGACG
  TGCTTCAAAT AAATATCGGG TTCGGGGGCC CTTGTGGCGA GGTCTGAGTG GGTAGACGGA
  GTCGTGGTCT CATAGCGGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342597	CHEV_2_72315009	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230565287					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307296 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	886 bp downstream
Tssr18351	transcription start site region 18351	952 bp downstream
Tssr18352	transcription start site region 18352	740 bp downstream
Tssr18353	transcription start site region 18353	728 bp downstream
Tssr18354	transcription start site region 18354	693 bp downstream