rs230580531 SNP Detail

Summary

• ID
  rs230580531
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56812044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAGCC TTGATTAAAT
  GTTGTCTTTT ATAAGAGTTG CCTTGGTGTG AAGAGTGTCA ATTCACAGAA ATGAGACCCT
  AACTATGGGT TGAGCCGGGA GTAGTGGCTT ACAATGGTTA TCCAGGCATT TGGGAGGTGC
  AAGTAGGAAC CACTTAGGGT TTAGCCTGCA GGAGACCCTT TTCCTAAATG CATACGTATA
  K
  ACATACATGC ATGCATTCAT ACAGACATAC ATAGGTTTTC TTACTTTGAA AAGAATGGCT
  GGACTTTAAA CATTCCTAGT AAGGTATGTT ATCCCAAAAG GAGGGAAGAC ACACTGAGTT
  GTTTATCTGT TCATATTGTT AGAAGTAACA TTAGCATTAT TTCTGAAATG TACTTCAGAA
  CTTATAACTG GTAAGAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859407	CHEV_19_56898102	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230580531					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56812044 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1070 bp downstream
Ccdc186	coiled-coil domain containing 186	1422 bp upstream
Cpgi11092	CpG island 11092	987 bp distal
Rr406045	regulatory region 406045	1194 bp downstream
Rr550140	regulatory region 550140	1696 bp distal
Rr550141	regulatory region 550141	1433 bp distal
Rr550142	regulatory region 550142	932 bp distal
Tssr157215	transcription start site region 157215	1648 bp downstream
Tssr159886	transcription start site region 159886	1525 bp upstream
Tssr159887	transcription start site region 159887	1392 bp upstream