rs230590856 SNP Detail

Summary

• ID
  rs230590856
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCACTACA CAGTAAGAAT TACATGCTAT
  GAAATTCAGG GTTCAAGTCT TACCAGAGAG GGAAGACAAA TCAAGTTCTC CCAGCATCCT
  GCACAGCATT AGTGAGACAT TTAACTACCT CGtttgtttt gttttgtttt gttttgtttt
  S
  ttttgttttg ttttgtttta tcttgtACAG CCCAAATAGA AAACATACCG GATACTTATC
  GTTGCAAAAT TCCCACTTGT TGAAAACTAC TGACCCTCAT TACCATTGTA CTGAAACGCA
  CTAACAGAAA CAGAAATTCA GGGTCCATGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320757152	CHEV_3_50170115	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230590856					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320642 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	219 bp downstream
Tssr33102	transcription start site region 33102	240 bp downstream
Tssr33103	transcription start site region 33103	324 bp downstream
Tssr33104	transcription start site region 33104	336 bp downstream
Tssr33105	transcription start site region 33105	397 bp downstream
Tssr33106	transcription start site region 33106	441 bp downstream
Tssr33107	transcription start site region 33107	466 bp downstream
Tssr33108	transcription start site region 33108	530 bp downstream
Tssr33109	transcription start site region 33109	595 bp downstream
Tssr33110	transcription start site region 33110	649 bp downstream
Tssr33111	transcription start site region 33111	682 bp downstream
Tssr33112	transcription start site region 33112	721 bp downstream
Tssr33113	transcription start site region 33113	767 bp downstream
Tssr33114	transcription start site region 33114	791 bp downstream
Tssr33115	transcription start site region 33115	850 bp downstream
Tssr33116	transcription start site region 33116	1255 bp downstream
Tssr33117	transcription start site region 33117	1485 bp downstream
Tssr33118	transcription start site region 33118	1512 bp downstream
Tssr33119	transcription start site region 33119	1538 bp downstream