rs230613474 SNP Detail

Summary

• ID
  rs230613474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63405870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGATGCAT GGCCAGACCT TGGTGACCTC
  CATATCAAGT ACAAAGCTCA GCAGACAACC CCACTGCTAA AGGGCACACA GCCAAGGCCC
  CTCTCTTACT GGGGCCCCTT TCCCTGTTTC AACCTTGAAG CTGACACTCT TTACCATCCC
  Y
  GGCAAGCCAA CCTAAAACTC AACTCTCTCC AAACTCAAGT GAAAGGAGGG ATTTCTGCCT
  GGGTGGTGGT CAGCACAGGT CTGCCAGCCT TGCTTCTACT GACCTAGCCA CAGCAGCTCA
  TCCTTCTGGA ACCTGCTTGA GCAGAGGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322233284	CHEV_7_70901008	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230613474					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63405870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	607 bp distal
Cpgi19188	CpG island 19188	1126 bp proximal
Otud7a	OTU domain containing 7A	within coordinates
Rr157438	regulatory region 157438	70 bp distal
Rr167925	regulatory region 167925	269 bp distal