rs230619574 SNP Detail

Summary

• ID
  rs230619574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59739027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAAGACC TACTGTGTAA AAGCAACAAA
  ACTgggctgg agagatggct cagtggttaa gagtactgac tactgttcca gaggtcctga
  gttcaattac cagcaaccac atggtggctc acaaccatct atataatggg atccgatgct
  Y
  tcttctgttg tgtctgaaga cagtgacagt gtattgacat atatgaaata aattcttaaa
  aaaaaaaGCA ACAAAACTAT AAAATATACA ATATGACTTG CTCTATCATA TTAATTACCT
  TACTCACCAT AACAAATTAA TTCATACAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739038	CHEV_1_59756712	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230619574					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59739027 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	444 bp downstream
Rr411703	regulatory region 411703	1754 bp distal
Tssr6887	transcription start site region 6887	1793 bp downstream