rs230621275 SNP Detail

Summary

• ID
  rs230621275
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37399335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGATGG CTTGCAAGTC
  TTGTAATTCC AGTTCTAAGG GATCTGATGC CTTTTGCTGA CCGTTACCAA CATCAGGCCC
  CTTCACACAT ACACACATAG GCAAACGTTT ATACACATAA AACTAAACGA ACACATTTTA
  AAATGAAGTT TAATTTTGTG TGTAAGTGTG GGGATATGGG TGGCATGTCC CATGTATGAC
  S
  GTCAAAGAAC AAGTCATGAG AGCAGGTTGT CTTCAGTCAT TGGGCGGGCT TGGCAGCAAA
  TACCTGTACT GGTTGAGGCA TCTTTCTGCC ACTACTGAGG TTTTAAAGTT AATGATCTGA
  GATAAACAGG ATTTCCAGCT TTAAAGAATA TGGAAATTGA CTAGGTGGTG GTGGCAGCTC
  AGGCCTTTAA TCCCAACATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377242023	MGP_WTSI_9_37295624	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230621275					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377242023	MGP_WTSI_9_37295624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37399335 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	668 bp downstream
Cpgi21578	CpG island 21578	775 bp proximal
Gm69832	predicted gene, 69832	324 bp downstream
Msantd2	Myb/SANT-like DNA-binding domain containing 2	982 bp upstream
Rr676695	regulatory region 676695	492 bp proximal
Rr676696	regulatory region 676696	1209 bp proximal
Rr676697	regulatory region 676697	1568 bp proximal
Tssr2827	transcription start site region 2827	1023 bp upstream
Tssr84392	transcription start site region 84392	731 bp upstream
Tssr84393	transcription start site region 84393	949 bp upstream
Tssr84394	transcription start site region 84394	984 bp upstream
Tssr84395	transcription start site region 84395	1242 bp upstream
Tssr88840	transcription start site region 88840	1790 bp downstream