rs230623809 SNP Detail

Summary

• ID
  rs230623809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11320257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAAGAA TAACCTTGCT
  ACTTCAATCT CTAGTCCCAT CATAGGCACA TGAGCCAACA GAGCTACAAA CAGGCTTCCA
  GATGTCCATG TAGACTAGAA AGGGTCCAAG AGAAATGTTA ACACTGTTCT CCTCAAAGCC
  TGTGTCTGTT TCAGGAAGCA TCAATGCAAG CACCATTGCA CACACAGTAC AGGAGAGGCG
  W
  CTGGAAGAAC ATTTACTTCC AGGGACAGCT GGACAACAAA GAGGCTCCTG AAGGACCTGA
  GAATAAGCCA AAAGCTATAA ACTGTACCTG ACCTGAATTC AAACAAGAAT ATAGAGACTG
  GCCTAATTTT AACATAATAA ATACACGATA TGTAAACAGA AGGGATTCGG GGAAATTCCT
  GACACGGGAC GTGTTTGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360594856	MGP_WTSI_4_11247404	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230623809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360594856	MGP_WTSI_4_11247404	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11320257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	1347 bp proximal
Dpy19l4	dpy-19 like 4	within coordinates
Gm26663	predicted gene, 26663	1708 bp upstream
Rr588912	regulatory region 588912	1218 bp proximal
Rr588913	regulatory region 588913	1870 bp proximal
Rr588914	regulatory region 588914	1881 bp proximal
Rr588915	regulatory region 588915	2000 bp proximal
Tssr36477	transcription start site region 36477	1643 bp upstream
Tssr36478	transcription start site region 36478	1673 bp upstream
Tssr36479	transcription start site region 36479	1973 bp upstream
Tssr40926	transcription start site region 40926	1819 bp downstream
Tssr40927	transcription start site region 40927	1852 bp downstream