rs230632151 SNP Detail

Summary

• ID
  rs230632151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATTCG TCCCAAATTA
  GCTTTACTGT GGATGGTCCC ATTGCTTTTG TTGGACTATC CAATAACATA AATGGCAAAC
  ACTTACGGGT CATCCAAAAA CTGACTTATG AATCTGGCTT CCTCAACTAT TCTAAGTTTG
  AAGTTGAGTC AAAAGTTGAA TCTCAGCACG TGGGCTCCAG CATTCTAACA GCCAATGGTC
  R
  GGCACTGCTC AAGGACGCAA AGGCAGAAAT GACTGGTGAG CACAATGCCA ACTTAAATGG
  AAAAGTTATT GGAACTTTGA AAAATTCTCT CTTCTTTTCA GCACAACCAT TTGAGATTAC
  TGCATCCACA AATAATGAAG GAAATTTGAA AGTGGGTTTT CCACTAAAGC TGACTGGGAA
  AATAGACTTC CTGAATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064707	MGP_WTSI_12_8017327	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230632151					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064707	MGP_WTSI_12_8017327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060521 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1809 bp downstream
Tssr112647	transcription start site region 112647	1928 bp downstream
Tssr112648	transcription start site region 112648	1906 bp downstream
Tssr112649	transcription start site region 112649	1424 bp downstream
Tssr112650	transcription start site region 112650	1344 bp downstream
Tssr112651	transcription start site region 112651	1292 bp downstream
Tssr112652	transcription start site region 112652	1262 bp downstream
Tssr112653	transcription start site region 112653	1243 bp downstream
Tssr112654	transcription start site region 112654	1229 bp downstream
Tssr112655	transcription start site region 112655	1206 bp downstream
Tssr112656	transcription start site region 112656	1186 bp downstream
Tssr112657	transcription start site region 112657	1172 bp downstream
Tssr112658	transcription start site region 112658	1139 bp downstream
Tssr112659	transcription start site region 112659	1060 bp downstream
Tssr112660	transcription start site region 112660	936 bp downstream
Tssr112661	transcription start site region 112661	701 bp downstream
Tssr112662	transcription start site region 112662	460 bp downstream
Tssr112663	transcription start site region 112663	219 bp downstream
Tssr112664	transcription start site region 112664	195 bp downstream
Tssr112665	transcription start site region 112665	40 bp downstream
Tssr112666	transcription start site region 112666	20 bp downstream
Tssr112667	transcription start site region 112667	11 bp upstream
Tssr112668	transcription start site region 112668	149 bp upstream
Tssr112669	transcription start site region 112669	234 bp upstream
Tssr112670	transcription start site region 112670	287 bp upstream
Tssr112671	transcription start site region 112671	402 bp upstream
Tssr112672	transcription start site region 112672	981 bp upstream
Tssr112673	transcription start site region 112673	1024 bp upstream
Tssr112674	transcription start site region 112674	1125 bp upstream
Tssr112675	transcription start site region 112675	1152 bp upstream
Tssr112676	transcription start site region 112676	1255 bp upstream
Tssr112677	transcription start site region 112677	1405 bp upstream
Tssr112678	transcription start site region 112678	1529 bp upstream
Tssr112679	transcription start site region 112679	1554 bp upstream
Tssr112680	transcription start site region 112680	1573 bp upstream
Tssr112681	transcription start site region 112681	1620 bp upstream
Tssr112682	transcription start site region 112682	1633 bp upstream
Tssr112683	transcription start site region 112683	1670 bp upstream
Tssr112684	transcription start site region 112684	1714 bp upstream
Tssr112685	transcription start site region 112685	1762 bp upstream
Tssr112686	transcription start site region 112686	1810 bp upstream
Tssr112687	transcription start site region 112687	1890 bp upstream
Tssr112688	transcription start site region 112688	1991 bp upstream