rs230636477 SNP Detail

Summary

• ID
  rs230636477
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTTCT GGCATAGCTT
  CTGAGCAGCC TCCCTGCATC TCACATTCCT CCCCACCCCC CACCCCACCC CCCTTTGTTC
  TTTTTGACAC TAGGGACAGT CCAGGGCCCT GTACATGCTA GGTGGGCACT CTATCCTGAG
  CTGCAGCTGG GCTTCTGGAA GTTCATTGCT CCAAGTAACA CCTTCACGTG CTGTGCTCTG
  C
  CCTTGCTGGG CCTTTCTGGA CCATCATTTA TTAACTTTTT TCCTACCTGT ATATCTAACA
  TTCTGCCTGA AGTAGAATTT ATTTGTTTTT AAACTCAGAC TTAAAAATTG GTCTCAAATC
  CCTTTGTGTC AGCATTCAAT ACTTAGAGGC TCTCCACCTG GAAACTGTAA ATAGAGAGAA
  ACTTCAAGCA ATTCCATTAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658629	CHEV_18_66082382	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230636477					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055799 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	360 bp downstream
Gm50119	predicted gene, 50119	1328 bp downstream
Gm58551	predicted gene, 58551	1045 bp upstream
Rr346799	regulatory region 346799	199 bp distal
Rr346800	regulatory region 346800	1602 bp proximal
Rr353052	regulatory region 353052	398 bp distal
Rr393825	regulatory region 393825	1485 bp upstream