rs230649039 SNP Detail

Summary

• ID
  rs230649039
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35220302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGGG AGTTGGGAAC
  AGGGGACTGG CTGAGGAAAG CTGTGAAAGC CAAGCCAAGG ACCCAGGTCT TAGGGTACCA
  CTTCTTAAGT CCATGGCTCC CTCTCACAGC ATCTGGACAC TGCCTTCTTA CACCAAGGCT
  CTTGGAAGTT TTCTCTAATC TCTTGTTCTT ATGAACAACC ATATCTAAAT TGTTATGGAT
  G
  TAGGAAAGAT TTTGTTAATG CTTAAAGCAT TTATTTATTT GTTGCTTTTG AGATAGGGTC
  TCATGCAGCC ATGACTAGTT TTGACTTTTT AGGTAGTCAA TGATAACTTT TTTCTATTCT
  TTTTGTTATT TATTTATTTG TTTATGTTTG AGACCAGGCT GGCCTTAAAT TCACTATGTA
  GCCCAGGATG ATCTTGAATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	WSB/EiJ	ZALENDE/EiJ
ss377198471	MGP_WTSI_9_35116591	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	WSB/EiJ	ZALENDE/EiJ
rs230649039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377198471	MGP_WTSI_9_35116591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35220302 () rs orientation: forward

Symbol	Name	Function Class
Gm33838	predicted gene, 33838	1206 bp upstream