rs230652356 SNP Detail

Summary

• ID
  rs230652356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCAGGAG GGAGAACTTT CTCAGATATC
  TGTCTGATGG AATATAGAAC TATTCGATCT GAAGCATCCA GTGGAGGAGT TAAAAATCCT
  Aggactaagt ttcagaagac cctgaactct ggactctgcc agtcagacta gaacaatctt
  R
  ggccacgacc ttacccattt ctgagtctca gcttccccca ctggaaaaca aggggttgga
  gcagatgata ccctttggct ctgaccttct gtgatGCACT CTTGAGAATA ATAATTAAGT
  AATTGAAGTT TATGCATGta gcatattgct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353679	CHEV_7_109400737	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230652356					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1239 bp distal
Rr652563	regulatory region 652563	1610 bp distal
Rr652564	regulatory region 652564	1281 bp distal
Tssr2354	transcription start site region 2354	1947 bp downstream
Tssr68330	transcription start site region 68330	1968 bp downstream
Tssr73946	transcription start site region 73946	1889 bp upstream
Tssr73947	transcription start site region 73947	1744 bp upstream
Tssr73948	transcription start site region 73948	1708 bp upstream
Tssr73949	transcription start site region 73949	1675 bp upstream
Tssr73950	transcription start site region 73950	1628 bp upstream