rs230653532 SNP Detail

Summary

• ID
  rs230653532
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69761770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTTACA TACAAATAAC
  TCCTGGGTTT GCTTTTATGT CACTATTGGG TCCTGCAAGA GGCTTGCCAG AGCGTCCTTA
  ATCCAATCAG GAGGCACTTT GAAAGGATGT CTGTTGAGCG GTCAGAAGGA TGTTCGTCGC
  TATTAAGTGT TGCCACACAA AATTTTTCGC ATGTTTCGGT CTGAGTTTTT TTTTTTTTTT
  W
  AATCTTCGGA GTTAAAAAAG TGAGGAATGA TGTACAGCTG CTCAGTTGCC TTCGACAGCT
  TGGAGATGCT GAGGGAAACG CTGCAGCCCT GGTGAAGAAG ATCTGACTAG GGACGGGTTT
  GGATCCATAC CAGGCTGGTG TGGATTGGGG CTGGTGTGGA CGGCTTACTC TAAACCCCTG
  CTTAAGGAAT TCCTGGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380797011	MGP_WTSI_10_69388688	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	T	A	A	A	A	T	T	A	A	A	A	A	T	A	T	A	A	A	T	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230653532					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	T	A	A	A	A	T	T	A	A	A	A	A	T	A	T	A	A	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380797011	MGP_WTSI_10_69388688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69761770 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Rr433504	regulatory region 433504	1936 bp distal
Rr433505	regulatory region 433505	within coordinates
Rr433506	regulatory region 433506	204 bp proximal
Tssr93970	transcription start site region 93970	1789 bp downstream
Tssr93971	transcription start site region 93971	438 bp downstream
Tssr93972	transcription start site region 93972	154 bp downstream
Tssr93973	transcription start site region 93973	116 bp downstream
Tssr93974	transcription start site region 93974	87 bp downstream
Tssr93975	transcription start site region 93975	70 bp downstream
Tssr93976	transcription start site region 93976	38 bp upstream