rs230657244 SNP Detail

Summary

• ID
  rs230657244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35019656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCTCT CTCTCAATCT
  CAATCTCTCT CTCTCCCTAC CCCCATTCCT ACCCCCGTTT TTTCCTCCTT TTCTCTCTCT
  CCCTTTCCTC ACCAATGTTC CCACATGGCC TCTCTGTCCT CTATCCCAGC TTTCTCTGTC
  CTTGTGGCTC CATCTGCCTC TGCCCCTTCT CCAGGTCCCT GCTCCCCCCC CCCGCCCCCC
  S
  CTTCCCTTCC CCCACAATAA ACTTTCCGTA TACTATGTCT GTGATTTTTT TCAGGAGGAC
  ACCTTGGCAT GGGCCTGCCA GGTACCGCAT TATATTTCAT GACACCCTTT CCACTCCTGC
  TGATGTCCTT CTGAATTAAT TCCTCTCCTA CTTTCTCGTG CATGCATGGG TGTGTGTGAG
  TGTGTGTGTG TGTTGTACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	KK/HlJ	NOD/ShiLtJ	PL/J	RF/J	SEA/GnJ	ST/bJ
ss370973321	MGP_WTSI_7_36105250	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	KK/HlJ	NOD/ShiLtJ	PL/J	RF/J	SEA/GnJ	ST/bJ
rs230657244					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370973321	MGP_WTSI_7_36105250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35019656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	1627 bp distal
Gpatch1	G patch domain containing 1	1791 bp upstream
Rr380656	regulatory region 380656	1972 bp upstream
Rr645358	regulatory region 645358	1782 bp distal
Rr645359	regulatory region 645359	1520 bp distal
Rr645360	regulatory region 645360	205 bp distal
Tssr72030	transcription start site region 72030	1794 bp upstream