rs230659605 SNP Detail

Summary

• ID
  rs230659605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57566564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTCCAT CCTGAGAACA
  CCCTGCCTAA CGTGCATTTT CCTTTGCTCT AGCGTCTCTC AAGTCTAATA TTCCCTTGAT
  AGCCAGGCAC TCTACACCCT TTCTAATCTA AAGATCCTTC TCTCTGTTGA CCACCTTCCT
  GTTCCTTCTA CACTTCCTAA GATCCGGGAA AGGTTGTTGA TGCCCCAGCA TACTTTCCAC
  Y
  TTGTATAGTT TCTTATGCCC CCCTAAACAG TTCCTGCTCT GGAGTGACTG CTCTCTGCTC
  CTCAGTCCTG AAGCCTACAG CTTCTCCTCC GCCTACTTTG TCCTGAACCA CACAGAAGCA
  CATGACCCCG ATACAATTTC CTGTCCTCTT GCTGTGGCTT TTGGAGTAAG TCCTCCAGTT
  TTTCCTTCTG CTCTTCGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361647835	MGP_WTSI_4_57579436	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230659605					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361647835	MGP_WTSI_4_57579436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57566564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	1135 bp proximal
Pakap	paralemmin A kinase anchor protein	within coordinates
Rr89687	regulatory region 89687	364 bp distal
Rr94491	regulatory region 94491	964 bp distal
Rr101053	regulatory region 101053	836 bp proximal
Tssr37355	transcription start site region 37355	1144 bp upstream
Tssr37356	transcription start site region 37356	1252 bp upstream
Tssr37357	transcription start site region 37357	1281 bp upstream
Tssr37358	transcription start site region 37358	1447 bp upstream
Tssr37359	transcription start site region 37359	1557 bp upstream
Tssr37360	transcription start site region 37360	1580 bp upstream