rs230668978 SNP Detail

Summary

• ID
  rs230668978
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCAAAG CAGTCAGGAC
  AATGAAGTGA AGTCCTCCAC ATTAAAAAAT CAAGAGGACG AAAAGACCAG ATCCCCGGTG
  GAAAAAGAAA ACCAAAAATC AAAGGGTCAA GAAAATGACC ATGTACATGA CAAAAATAAA
  AAATGTGATC ATGAATCAAG CCCTGGAACA GATGAAGACA AAAGTGGATG AGTGAGTTGT
  G
  TACTCTTAAT TCCTTCCTGT CTCAAATTTT CAGTTTTTAA GACTTACTGT TGAACCTCCC
  TTTTTTATTG TTTTCATTGT TTTGGAGTTG TTTATGTTTG TCTCCCCCCA CCCCCTTTTT
  TTTTTTAAAT GTGGACTTCA TTGAGTTGAT CTTTTGATAA TCTGCTACCT GGATAATTTG
  TACTGCTAAA GTTTTAATAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377458	MGP_WTSI_2_69588449	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230668978					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377458	MGP_WTSI_2_69588449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580736 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1422 bp downstream
Tssr18140	transcription start site region 18140	1393 bp downstream
Tssr18141	transcription start site region 18141	1374 bp downstream
Tssr18142	transcription start site region 18142	1355 bp downstream
Tssr18143	transcription start site region 18143	1315 bp downstream
Tssr18144	transcription start site region 18144	1119 bp downstream
Tssr18145	transcription start site region 18145	988 bp downstream
Tssr18146	transcription start site region 18146	898 bp downstream
Tssr18147	transcription start site region 18147	842 bp downstream
Tssr18148	transcription start site region 18148	806 bp downstream
Tssr18149	transcription start site region 18149	787 bp downstream
Tssr18150	transcription start site region 18150	742 bp downstream
Tssr18151	transcription start site region 18151	719 bp downstream
Tssr18152	transcription start site region 18152	650 bp downstream
Tssr18153	transcription start site region 18153	568 bp downstream
Tssr18154	transcription start site region 18154	462 bp downstream
Tssr18155	transcription start site region 18155	441 bp downstream
Tssr18156	transcription start site region 18156	390 bp downstream
Tssr18157	transcription start site region 18157	121 bp upstream