rs230670907 SNP Detail

Summary

• ID
  rs230670907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCAGTG TTGACATCGT
  ACCAATGAAC AGGACAGACA GACAGACCAG GGCCTCATGT CCATGATTTT AAGACCCTCT
  AGCCCCCATC CCTTCCCTAG TGCAGGCTAC ATGGAGACTG AGGGCCTCTC AGCCTGGGGG
  CATGGTGGGA TTTTATAGAC ATGAATCAAG GCTTCATTAA CTCATTCATA CAACAATTCA
  Y
  CTATCCATTC AGTAGACTTC AGCATGCCCA TCTTGTGCCA GAAGGTACCT CAAAGAGCTC
  CTCGTCCAGT GGGAAGAGAG CTGATCTCAT TTGTAAGGAA TACCCTCTTC ATCCCCCACC
  CTTGCCATTG ATCTATTCAT TCCATCTCCA TGACAACAGG AAGAGAGGGC CCGGCGTGAG
  GAGGAGGAGA ACAGGAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552072	MGP_WTSI_1_137745767	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230670907					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552072	MGP_WTSI_1_137745767	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776928 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1328 bp distal
Rr12645	regulatory region 12645	1473 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1450 bp downstream
Tssr226	transcription start site region 226	1180 bp upstream
Tssr227	transcription start site region 227	250 bp downstream
Tssr9015	transcription start site region 9015	1454 bp downstream
Tssr9016	transcription start site region 9016	1202 bp downstream
Tssr9017	transcription start site region 9017	1164 bp downstream
Tssr9018	transcription start site region 9018	1146 bp downstream
Tssr9019	transcription start site region 9019	1113 bp downstream
Tssr9020	transcription start site region 9020	342 bp downstream
Tssr9021	transcription start site region 9021	322 bp downstream
Tssr9022	transcription start site region 9022	153 bp upstream
Tssr9023	transcription start site region 9023	172 bp upstream
Tssr9024	transcription start site region 9024	266 bp upstream
Tssr9025	transcription start site region 9025	555 bp upstream
Tssr9026	transcription start site region 9026	757 bp upstream
Tssr9027	transcription start site region 9027	867 bp upstream
Tssr9028	transcription start site region 9028	907 bp upstream
Tssr9029	transcription start site region 9029	1487 bp upstream
Tssr9030	transcription start site region 9030	1522 bp upstream
Tssr9031	transcription start site region 9031	1581 bp upstream
Tssr13890	transcription start site region 13890	1415 bp upstream
Tssr13891	transcription start site region 13891	1170 bp upstream
Tssr13892	transcription start site region 13892	1103 bp upstream
Tssr13893	transcription start site region 13893	1086 bp upstream
Tssr13894	transcription start site region 13894	337 bp upstream
Tssr13895	transcription start site region 13895	293 bp upstream
Tssr13896	transcription start site region 13896	188 bp downstream
Tssr13897	transcription start site region 13897	259 bp downstream
Tssr13898	transcription start site region 13898	1547 bp downstream
Tssr13899	transcription start site region 13899	1615 bp downstream
Tssr13900	transcription start site region 13900	1625 bp downstream