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rs230672972 SNP Detail
Summary
  • ID
    rs230672972
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:91051743 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCATAGTG GAAGGGCAGG
GCAGTAGAAT GAGGCAGGCA GCTCACGCGC GCGTGTCCCC AACCCACTCA GCTTAGGGGC
GGGGCTCTGT GCTTCCTGAT GAGGGGACCC TGAGCTCAGG GAATTTCCCT GGTCCCCGGG
CTTTTCCAGA CATCGTGCAT AAAAGGAGCT CTCGGGACCT CAGAGCCCCA GACTGCGCCT
M
AGTGCCTCCA ACAAGCTTCC TCGGGCACTC CAGACTCCAG CCACACTTCA GCCTAGCGCC
ATGGCCCCTC CCACCTGCCG GCTCCTCAGT GCTGCACTGG TCCTGCTGCT GCTGCTGGCC
ACCAACCACC AGGCTACAGG TGGGATTCGG ATTCGAGGCT GATGTTTCTG GGGAAGCCTC
AGGTGGGCGC AGCCATCCCC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365847482 MGP_WTSI_5_91332910 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230672972 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365847482 MGP_WTSI_5_91332910 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:91051743 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl2 C-X-C motif chemokine ligand 2 15 bp upstream
Gm73232 predicted gene, 73232 680 bp upstream
Rr614420 regulatory region 614420 691 bp distal
Rr614421 regulatory region 614421 822 bp distal
Rr614422 regulatory region 614422 1 bp distal
Tssr47224 transcription start site region 47224 175 bp downstream
Tssr47225 transcription start site region 47225 73 bp downstream
Tssr47226 transcription start site region 47226 4 bp downstream
Tssr47227 transcription start site region 47227 185 bp upstream
Tssr47228 transcription start site region 47228 228 bp upstream
Tssr47229 transcription start site region 47229 255 bp upstream
Tssr47230 transcription start site region 47230 280 bp upstream
Tssr47231 transcription start site region 47231 300 bp upstream
Tssr47232 transcription start site region 47232 465 bp upstream
Tssr47233 transcription start site region 47233 482 bp upstream
Tssr47234 transcription start site region 47234 554 bp upstream
Tssr47235 transcription start site region 47235 1304 bp upstream
Tssr47236 transcription start site region 47236 1324 bp upstream
Tssr47237 transcription start site region 47237 1373 bp upstream
Tssr47238 transcription start site region 47238 1379 bp upstream
Tssr47239 transcription start site region 47239 1439 bp upstream
Tssr47240 transcription start site region 47240 1451 bp upstream
Tssr47241 transcription start site region 47241 1466 bp upstream
Tssr47242 transcription start site region 47242 1503 bp upstream
Tssr47243 transcription start site region 47243 1526 bp upstream
Tssr47244 transcription start site region 47244 1560 bp upstream
Tssr47245 transcription start site region 47245 1580 bp upstream
Tssr47246 transcription start site region 47246 1631 bp upstream
Tssr47247 transcription start site region 47247 1675 bp upstream
Tssr47248 transcription start site region 47248 1738 bp upstream
Tssr47249 transcription start site region 47249 1808 bp upstream
Tssr47250 transcription start site region 47250 1946 bp upstream
Tssr51810 transcription start site region 51810 741 bp upstream
Tssr51811 transcription start site region 51811 687 bp upstream
Tssr51812 transcription start site region 51812 317 bp downstream
Tssr51813 transcription start site region 51813 349 bp downstream
Tssr51814 transcription start site region 51814 1323 bp downstream
Tssr51815 transcription start site region 51815 1357 bp downstream
Tssr51816 transcription start site region 51816 1391 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory