rs230675028 SNP Detail

Summary

• ID
  rs230675028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117259335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGAGAG TCCAAGGAGA
  GCCGGTGAGT GAAGTACCAG AGAAGAGCTT GCGCAGCGTG AACATGGTTT TTCTGGCCTC
  ACAGCCAGGC ACCTAGGGAA AAACACCGGC AGCCTGAGCC CGGGTGGCAT TGAGTGGGCA
  CAGCAGCAAT GCTGACACCT GGACGACACC GATGCTGCTC CACTGCAAAG AACCCGAGGT
  Y
  TCCCCCTGAG GGTTGAGTTC CGGGATGCTG GAAGGGGGAT CATGTGATGG GCCCGGGAGT
  GAAAGACATA GATCCTAAGG GCTGGCCAAG GGCTAGCTAG ACGATTTGTA GAGATTAGAC
  CAGCGTCTCA CCTCTTTCTT CTAAACAGCA GGCTGGCTTC CCAACTCTTC CCTAAAGTTC
  GACCTCGAGG TTCCTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366399360	MGP_WTSI_5_117571279	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230675028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366399360	MGP_WTSI_5_117571279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117259335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16405	CpG island 16405	205 bp distal
Gm57263	predicted gene, 57263	1227 bp upstream
Rr378521	regulatory region 378521	within coordinates
Rr399292	regulatory region 399292	1128 bp downstream
Rr618571	regulatory region 618571	1978 bp distal
Rr618572	regulatory region 618572	1238 bp distal
Rr618573	regulatory region 618573	1131 bp distal
Rr618574	regulatory region 618574	within coordinates
Rr618575	regulatory region 618575	1825 bp proximal
Taok3	TAO kinase 3	Intron
Tssr48350	transcription start site region 48350	1090 bp downstream
Tssr48351	transcription start site region 48351	1074 bp downstream
Tssr52880	transcription start site region 52880	1373 bp upstream