rs230676527 SNP Detail

Summary

• ID
  rs230676527
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115078265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCACA CACCTTTAAT
  CCCAGCACTC GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGATCTACA
  AAGTGAGTTC CAGGACAGCC AGAGCTATAC AGAGAAACCC TGTCTCGAAA AACCAAAAAA
  AAAAAAAAAC AAAAAAACAA AAAAACAAAA AAAAAACCAA AAAAAAAAAC CCCAAAAAAA
  M
  CAAACAAAAA CAACAACAAA AACAACACAC ACACAAAAAA AATGAAGTGT AGATCTGACC
  CTCTCAAGCT GTCCTGATCC CCACATATGC ACTCTCTCTT CCACACACAA ATGAATATAA
  TACAATTGTT TAAAAATTAT TTGGTGTGTG TATGACTTTA CCATTATTAA ACGCTAAAGC
  AAGCTGGTGT CATCCTGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366346018	MGP_WTSI_5_115390215	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs230676527					SNP	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366346018	MGP_WTSI_5_115390215	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115078265 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	1948 bp upstream
Cpgi16342	CpG island 16342	1851 bp proximal
Rr399277	regulatory region 399277	1842 bp upstream
Rr618069	regulatory region 618069	1135 bp proximal
Rr618070	regulatory region 618070	1499 bp proximal
Rr618071	regulatory region 618071	1976 bp proximal
Tssr48192	transcription start site region 48192	1970 bp upstream