rs230677949 SNP Detail

Summary

• ID
  rs230677949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52215471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGAATGC AGAGCACAGT TTTATAGCCC
  TGTACTGTTA AGCAGGCTGA GAGGCCGCCT GCTCATAAGC TTTCTAGCGA TTTACTCAAC
  AAAGCTATTC AAGTGTTATT ATCAAAAGAA AGTACCCCCT TTTCTCCAGG AAAAGAAAAA
  S
  GTTAATATAT TTCTACACCC AACCATGTCT ACAAATCTGC CCTGCTCTAT TTTATTGGGG
  GTACTTTCCC CAATCAAGGC TAATCTTCCA CTTACCTGAG TGCCCCGGCT CTTTCCAGGA
  ACCCTATATT GATTGCTATC TCTCTAGGGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319719590	CHEV_1_52233156	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230677949					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52215471 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	226 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	871 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	1064 bp upstream