rs230678575 SNP Detail

Summary

• ID
  rs230678575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118427959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAGAGG CTGACCTAGA
  TTAGATCTTA TGGAGGCTAG AATTTTCTAG GAGTGGATCT AGGTCAGCAG ATGGAGGCAG
  TAAGCCCCTC AGACAACAAT CACAACAGGA GAATAAAAGT TATTTTTATA GCCTGATCTA
  CAGAGCGAGT TCCAGGATAG CCAAGGCTAC ACAGAGAACC CTTGTTTTGA AAAACAAAAA
  M
  AAACAAAAAA CAAAAGCAAA CTTTTTATTG TGAAGTAAAG TTGCCCTGGA TGGTCTTGAA
  GTCTTGGTCC TCACATCTCA GTCTCCAGAG TAGCTGAACT ATAGGCCTGC ATTACCAAGC
  CTTTAGCTCC AGTGAGACAG GCAAAGCGCT TACCCTGTTT GTATTCTGTG TTAGATCGTA
  GTTTACAGGA CATCTGGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss355413497	MGP_WTSI_2_118423214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	A	A	A	A	C	C	C	C	C	C	A	A	A	A	A	A	A	C	C	C	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs230678575					SNP	A	A	A	C	A	A	A	A	A	A	C	C	C	C	C	C	A	A	A	A	A	A	A	C	C	C	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355413497	MGP_WTSI_2_118423214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118427959 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	733 bp upstream
Cpgi12084	CpG island 12084	547 bp proximal
Rr397211	regulatory region 397211	559 bp upstream
Rr563273	regulatory region 563273	243 bp proximal
Rr563274	regulatory region 563274	744 bp proximal
Rr563275	regulatory region 563275	1619 bp proximal
Tssr19562	transcription start site region 19562	731 bp upstream
Tssr19563	transcription start site region 19563	754 bp upstream
Tssr19564	transcription start site region 19564	793 bp upstream