rs230681178 SNP Detail

Summary

• ID
  rs230681178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72198067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGGAGA GTTGCTATTA
  ATAAATTCTC CTCATAAAAT TGTAGTGTTC TATGTACTTA AAGAGAAACC AAGGACACTT
  ACTAAATTAC TTTGGTGGGC ATCTCATAAA AAACAATGGG GATCCTGTTG GCTTTGGTGT
  GAGGAAGGAC TGTTCCCTCC ACTGTTTGAG AAAGAGGACA TGAGATGAAA GGAAGTACTG
  Y
  GTAGAAATAT GTTTTTCCTA TATTCTGTCT TTGCCTGGAA CAGAAAAGAC TGAACACTTT
  TAAGGAGTAA CCATGAAATA TATCTTAAAG TATAGTTTCT CATTCAAATC AATAGAATTA
  TCTACATCTG ATGCACCCAG TAGATAGAGT ACATTAACTC ATATCATACA TTTATCAGAG
  TAAATTTGGC ATTTTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342105	CHEV_2_72205780	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230681178					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72198067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1355 bp distal
Rr558962	regulatory region 558962			848 bp distal
Rr558963	regulatory region 558963			1367 bp proximal