rs230682738 SNP Detail

Summary

• ID
  rs230682738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101051849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CGCCACATTT TGTTCTTTTT
  R
  TTCACAACTT TCTTGCCATC AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324139391	CHEV_12_102323800	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230682738					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101051849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	1352 bp distal
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	1888 bp upstream
Rr387703	regulatory region 387703	352 bp downstream
Rr471411	regulatory region 471411	1789 bp distal
Rr471412	regulatory region 471412	within coordinates
Rr471413	regulatory region 471413	1109 bp distal
Tssr114724	transcription start site region 114724	1847 bp downstream
Tssr114725	transcription start site region 114725	1788 bp downstream
Tssr114726	transcription start site region 114726	1758 bp downstream
Tssr117353	transcription start site region 117353	1979 bp upstream
Tssr117354	transcription start site region 117354	1873 bp upstream