rs230698592 SNP Detail

Summary

• ID
  rs230698592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5347814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTTGCCA TTTCAGTTCT GTTAAATAGA
  TTGTCATGTC TATCACCCAC AGACTAatat acacatgcat acatatatac atgcatacat
  gcatatacac acatactcct tctctctctc tctccccctc tctcccctcc tctcccctcc
  Y
  ctcctctcct ctcctctcct ctcctctcct ctcctctcct attctctcct ctcTGAGTCA
  GCCTGTGATC TCCTGTACCA ACTGCACCCA CAAATGAACT GGAGAACTAA ATGCCTGTGC
  AAAACCATGT GACTTTCAGA GTTTGAGCTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325518180	CHEV_18_5347812	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230698592					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5347814 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	444 bp downstream
Gm52372	predicted gene, 52372	1200 bp upstream
Gm58537	predicted gene, 58537	within coordinates
Rr370337	regulatory region 370337	489 bp downstream
Rr533383	regulatory region 533383	1039 bp proximal