rs230701137 SNP Detail

Summary

• ID
  rs230701137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91345627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAACC CTTTTAGTCA
  CAGTGCAGAG TGAAAATATT GACATTGTTC TTGCGGCCAA CAGGTAATGA GAAGATTCCC
  ATAACTGTTC CATAGGTTAT GAATGGCCCT CAGGAATCAT AAAATTGCTT TTAACAACAT
  ATTCATGTTT TGCCTGCATG TCTATGTATG TCTATGCACC ACTTGAGTTC CTGGTGCTTA
  Y
  GGAAGCCAAA AGAGGCCATC ATATCTCCCA GAACTGGAGC TATAAATAGT TCTGAGCTGC
  CCTGCTGGGG CTAGAACTCT AATAGAGTAG CAAGTGCCCT TAACCACCGG GCCATCTCAC
  AGCCCCGGAA ACAAGGCTTT GAAAGGAACA TTTGTAAAAC GCTCCAGGGA GTCAAGGCTA
  GCATATCAAT ACTGTACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397323880	MGP_WTSI_16_91548984	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230701137					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397323880	MGP_WTSI_16_91548984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91345627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	1093 bp distal
Ifngr2	interferon gamma receptor 2	within coordinates
Rr325567	regulatory region 325567	within coordinates
Rr392125	regulatory region 392125	within coordinates
Tssr139407	transcription start site region 139407	1625 bp downstream
Tssr139408	transcription start site region 139408	1466 bp downstream
Tssr139409	transcription start site region 139409	899 bp downstream
Tssr139410	transcription start site region 139410	1798 bp upstream
Tssr142093	transcription start site region 142093	1099 bp upstream
Tssr142094	transcription start site region 142094	544 bp upstream
Tssr142095	transcription start site region 142095	429 bp upstream
Tssr142096	transcription start site region 142096	1005 bp downstream