rs230702378 SNP Detail

Summary

• ID
  rs230702378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10949389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTGAGTC TTTCTTCAAG TTTTCTAACT
  GAAGTGTAGA AGAAggcctg gaagctcagt ggtttacaag cactggctgc tggaagagga
  cctaagtttg attcccacca cccagacagc agtttaccac tgtctataat tccaagcttg
  R
  gggatctttt ctcttaataa gcgttacaca caaatgatac acagacatct gttcaggcaa
  aatactatac acataaaata aaTTTAAAAT AAAGTATAAA TGAAAGACTA TGTATAAATT
  AGCCACTAAA ACATTAAAGT GGCAATTTAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635039	CHEV_1_10869246	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230702378					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10949389 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	1122 bp upstream
Rr11561	regulatory region 11561	812 bp proximal
Rr29991	regulatory region 29991	589 bp distal
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	550 bp downstream
Tssr5932	transcription start site region 5932	1120 bp upstream