rs230705519 SNP Detail

Summary

• ID
  rs230705519
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTATTG AGGTTTCATG
  ATGATACCCT TCCCGTATAC CTAAAAGACA CTATCTTGTA GCAGACGTCC TGGTCCTCTG
  GCTTTTACAC TCTTTCCACT CCCTCTTCTG TGAAGTTTTC TGAGCTTGAG TAAGTTTCCC
  AAGCCTTGTG TTACAGATGC ATCAAATTGG GTTGGAAACC TCAAGGTCAG TCATTCTCTG
  W
  GTTTGACTGG TTGTGGCTTT CTATAATGTT CTCCCTCTAC TACCAAAAGA AGACTGAATG
  AATGATGGTA TTCTCAGGGA GTTTGCCAAT AAGAACATGC CTACAGTATT TTAAAGGTTC
  CTGTGAATTC AACAGTACAA TTAAATGGAT CTAGTAATAT TTTGCTATCT ACTTTCATTT
  AAAAACAAAA GAATATACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608880	MGP_WTSI_1_140073393	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230705519					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608880	MGP_WTSI_1_140073393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104554 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	1108 bp upstream
Rr396335	regulatory region 396335	1288 bp downstream
Rr396336	regulatory region 396336	328 bp downstream
Rr419677	regulatory region 419677	1560 bp distal
Rr419678	regulatory region 419678	1020 bp distal
Tssr233	transcription start site region 233	1191 bp upstream
Tssr9154	transcription start site region 9154	1179 bp downstream
Tssr9155	transcription start site region 9155	1116 bp downstream
Tssr14021	transcription start site region 14021	1618 bp upstream
Tssr14022	transcription start site region 14022	1562 bp upstream
Tssr14023	transcription start site region 14023	1505 bp upstream
Tssr14024	transcription start site region 14024	1172 bp upstream
Tssr14025	transcription start site region 14025	1156 bp upstream
Tssr14026	transcription start site region 14026	1128 bp upstream
Tssr14027	transcription start site region 14027	1112 bp upstream
Tssr14028	transcription start site region 14028	1076 bp upstream
Tssr14029	transcription start site region 14029	1052 bp upstream
Tssr14030	transcription start site region 14030	904 bp upstream
Tssr14031	transcription start site region 14031	880 bp upstream