rs230706153 SNP Detail

Summary

• ID
  rs230706153
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110766128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGCAGAG GCAGACGGAT TTCTGAGTTC AAGGTCTACA
  GAGTGAGTTC TAGGACAGCC AGGGCTACAC AGAGAAACCT TGTCTCAAAA ACAAAACAAA
  M
  AAACATACAA ACAAACAAAG TTGTGCCCCT AAAGCCCAGT CCAGTTCTCA GCAGCAGGCA
  GGCAGGGTTC CCCGGCTTCC TTGACCTTAC AGCTTTTGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss378913818	MGP_WTSI_9_110839564	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs230706153					SNP	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378913818	MGP_WTSI_9_110839564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110766128 () rs orientation: forward

Symbol	Name	Function Class
Rr192786	regulatory region 192786	473 bp proximal
Rr192787	regulatory region 192787	1473 bp proximal
Rr202609	regulatory region 202609	856 bp distal
Rr202610	regulatory region 202610	538 bp proximal
Rr207413	regulatory region 207413	673 bp proximal