rs230706671 SNP Detail

Summary

• ID
  rs230706671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148489615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGGCCG CATCGCGTCT
  GGGCTCCGGC CGCCTCCGCC TCGCTGCCTG CCTTCCGCAG CGTCTTCCGG GGGCTCCTCC
  CTTAGCTTGG GAACAGCTCC CCCTCAGAGC CCTGACTCTC CGCCTCCTCC TCCACTTCTC
  AATCCCACAC GCCCCGGCCG CCTCCTGTCA TCGCCTCAGC CCAACATGGC GGCGGTGGCC
  S
  CTGCTGGTGC CCGAGAGCCG ACTTGGGAAT AGCGCCCCCC ACCTCCCCCG CCCCCGTCTG
  CGCTTGTTCC GTTCGTCACA ACGGAGCCCT CTCGGAGCAT CATGGGAAAT GTAGTTTGTG
  CAGGTGAGGG GAAGGGGCCT CCGGGGCGTC CTTGCCCGCA TCGATGCCAC GCCCCCGCAT
  AGCAACAGTT GCTAGGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718355	CHEV_5_149364381	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230706671					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148489615 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	412 bp downstream
Cpgi17075	CpG island 17075	1180 bp distal
Cpgi17076	CpG island 17076	within coordinates
Gm72666	predicted gene, 72666	1036 bp upstream
Gm72684	predicted gene, 72684	366 bp downstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	154 bp distal
Rr625195	regulatory region 625195	within coordinates
Rr625196	regulatory region 625196	within coordinates
Rr625197	regulatory region 625197	546 bp proximal
Rr625198	regulatory region 625198	1110 bp proximal
Rr625199	regulatory region 625199	1389 bp proximal
Tssr49862	transcription start site region 49862	412 bp downstream
Tssr54570	transcription start site region 54570	1124 bp upstream
Tssr54571	transcription start site region 54571	682 bp upstream
Tssr54572	transcription start site region 54572	584 bp upstream
Tssr54573	transcription start site region 54573	532 bp upstream
Tssr54574	transcription start site region 54574	377 bp upstream
Tssr54575	transcription start site region 54575	288 bp upstream
Tssr54576	transcription start site region 54576	117 bp upstream
Tssr54577	transcription start site region 54577	within coordinates
Tssr54578	transcription start site region 54578	1051 bp downstream
Tssr54579	transcription start site region 54579	1188 bp downstream
Ubl3	ubiquitin-like 3	16 bp upstream