rs230716872 SNP Detail

Summary

• ID
  rs230716872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28043348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAGCCC AGATTACCAT
  CAAATTCTGA TTCTCCTGCC TCAGCTTTTC AAGTGCTGGA ATGATAAGTA TGCACTACCC
  CCATACCTAG CCAGCCAAGA GCAAAATATA TTCTTTGGAA TGATTTAGGA TTAGAGTCCA
  GAAATCTCCA GATTCAAGCA ATCTCCGAAA TGTGCTCTGA GCTTTTATTG ACCAAGCCAG
  Y
  TCAGTCAGTC AACAGGTTCT CCAGAGAGGG AGGAAGGATT AAAAAGAAAA AAAAAAGACA
  ATTAGACAAC ATTGTAGCAT GAGGCAAATT TAATTTTCCC AATCTGCTTT TTATACCATT
  TTAATTACAT GCAAGTATTA AGGGCCAGTA GTACATTGAG CTTTTTAAAT CACAAAGTCT
  TTGGAAATGG CAGTAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349848	CHEV_17_27961319	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230716872					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28043348 () rs orientation: forward

Symbol	Name	Function Class
Gm65123	predicted gene, 65123	1338 bp downstream
Gm65125	predicted gene, 65125	1847 bp downstream
Rr405125	regulatory region 405125	1828 bp upstream
Tssr143360	transcription start site region 143360	855 bp upstream
Tssr143361	transcription start site region 143361	905 bp upstream
Tssr147072	transcription start site region 147072	1663 bp downstream