rs230718367 SNP Detail

Summary

• ID
  rs230718367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84563343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTGGTC TGAGATGCTG
  AGCGCCTTTC CACATGCTCC ACCCTCCCCC GTGCGAAGGC TTGAGCTGAG ACCAGAGCAA
  GCCATTATGT ATGAAAGAGG AGCAGACCTC AGGGTCTGAG AGGACCCGGG GCGAGGCCAT
  GTAATGGACC AAGACTGGTT TGTCAGAGGC TGAGACCAGC TCAAAGAAAA GAACACAGGT
  R
  GTGTTCCTGT CTCCAGATTT ACTCTCCAGG AGGAACGCAA AACAGTCCGG AGCAGAGAAT
  TAGGGATTGG AGGGTTGGGT ACTTCAAGAC CTGGTGCCTC TGGCTAGGAC AGATCTTCTC
  TCACCAGATA AGCTGTAGTG GGATCCATGA ACAACTTCTT GGTATCCACA CTGCCTGTCT
  CTCTCAACAC TATCCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595490	CHEV_5_84844509	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230718367					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84563343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	612 bp proximal
Cpgi16023	CpG island 16023	1398 bp proximal
Epha5	Eph receptor A5	within coordinates
Gm42163	predicted gene, 42163	1254 bp upstream
Gm71976	predicted gene, 71976	1972 bp upstream
Tssr51507	transcription start site region 51507	1628 bp downstream
Tssr51508	transcription start site region 51508	1659 bp downstream
Tssr51509	transcription start site region 51509	1814 bp downstream
Tssr51510	transcription start site region 51510	1840 bp downstream
Tssr51511	transcription start site region 51511	1884 bp downstream
Tssr51512	transcription start site region 51512	1911 bp downstream
Tssr51513	transcription start site region 51513	1994 bp downstream