rs230728205 SNP Detail

Summary

• ID
  rs230728205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAGC GGCAGAGGCA
  GCAGCTGCTA CGGGAAAGCG GAGCTCTATG GTGTCTCTGT GCCTGCGCCT GCCCCGAGCC
  AGCCCCACGC CCGAGCCGCG GCGCGCGCGG CCAGGGCCCG GCTCCGCCGC AGCCACGGCT
  GCGTCCCCAG GCCCGGGCGC CTCCCCGCAG GCCCGCCCCC CCTCCCGCTC CACGCTCCCG
  Y
  CCCGAGCCGT TGGGATGTGC GGCCCGTGCT TGGGGATGCC TCCCCGAGTG GGGTGACTGC
  TCGGGGGGGC CTGTGGCCCA AACACGGGGG CCTCTGCGGG CTCCGGGACG GCCGTGCTGC
  TGCAGCCCAC CACAAGACAC CCCTCCCCGG GACTGCCCGC CTAACGTGCC CACCCTGCCC
  AGAAGCCTAG TCTGCACCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367145530	MGP_WTSI_5_149865006	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs230728205					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145530	MGP_WTSI_5_149865006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	429 bp proximal
Hmgb1	high mobility group box 1	373 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1414 bp downstream
Rr399531	regulatory region 399531	119 bp downstream
Tssr1757	transcription start site region 1757	200 bp downstream
Tssr49872	transcription start site region 49872	221 bp downstream
Tssr54616	transcription start site region 54616	1975 bp upstream
Tssr54617	transcription start site region 54617	1806 bp upstream
Tssr54618	transcription start site region 54618	1722 bp upstream
Tssr54619	transcription start site region 54619	1451 bp upstream
Tssr54620	transcription start site region 54620	377 bp upstream
Tssr54621	transcription start site region 54621	359 bp upstream