rs230740514 SNP Detail

Summary

• ID
  rs230740514
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79897534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGACAT TACCCCTTGG
  CTTCACACCA CCATTTGGTA GCGGAGCATG GTGGGATCCA AGCTTTTCAC TTTAGCCTTT
  GGGAAAGGAG AGGAGAGCCA GATGATGGTG CATGCATATA ATCCCATCAT TAGGGAAGCT
  GAAACAAAAA GATTACGTGT GTTCTAGACC AGCTTGGACT ACAACGTGAG ACCCTGCCCC
  S
  CATCAAAAAT CATATAACTA TGGGCTGATG AGATGGCTCA GCTGGAGAAG AGGGCTTGTT
  GCTCAAGCAT GAGGGCCTTG AGTTTGAACC CATAGTGCTC ACATTAACAC AACAAAACAA
  AAGATGGCTG TGGGGTTGTG GTGGTGGCCA GTGCCTTTGA TCCCATCACT CAGGAGGCAG
  ATGCAAGCAG ATCTCTCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322280552	CHEV_7_87392672	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230740514					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79897534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	981 bp distal
Gm73873	predicted gene, 73873	1288 bp upstream
Rr168083	regulatory region 168083	533 bp distal
Rr400401	regulatory region 400401	1290 bp downstream
Tssr2310	transcription start site region 2310	1422 bp downstream
Tssr67422	transcription start site region 67422	1415 bp downstream
Tssr67423	transcription start site region 67423	1357 bp downstream
Tssr67424	transcription start site region 67424	1352 bp downstream
Tssr67425	transcription start site region 67425	1330 bp downstream
Tssr67426	transcription start site region 67426	1266 bp downstream
Tssr67427	transcription start site region 67427	1207 bp downstream
Ttll13	tubulin tyrosine ligase-like family, member 13	within coordinates