rs230742776 SNP Detail

Summary

• ID
  rs230742776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55793033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGTAT GAGGGTATGA
  CTAGCCTAGT AACAAGATCT TTTTCCCAAA CAACCATTAG CTTGTGTAAA AAAATTAGTA
  CATGGAATGT AGGCCTTTGC AAGGACACAA GTTTAAAGTT TAGCTTTTCT TAGGAAAGTC
  TGATTAAAGG GAAAAAAAAA AACCAAAAGA CCAGTAACAG TTCCTGGGTT TTCTCTCTCT
  Y
  TCTTTTTTTT TTTTTTGTTT GTTTGGGTTT TTCGAGACAG GGTTTCTCCG TATATTAGAG
  CTCACTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCTC GGGACTCAGA AATCCACCTG
  CCTCTGCCTC CCAGTGCGCC ACCACGCCTG GCTGTAACAG TTCCTGTTAC CTGCAAATGC
  TTAGATGGAT CTTAATTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss396395713	MGP_WTSI_16_55972783	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs230742776					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396395713	MGP_WTSI_16_55972783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55793033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	721 bp proximal
Gm28037	predicted gene, 28037	within coordinates
Rpl24	ribosomal protein L24	1235 bp downstream
Rr404882	regulatory region 404882	890 bp upstream
Rr517154	regulatory region 517154	71 bp distal
Rr517155	regulatory region 517155	78 bp proximal
Rr517156	regulatory region 517156	407 bp proximal
Rr517157	regulatory region 517157	1053 bp proximal
Rr517158	regulatory region 517158	1268 bp proximal
Rr517159	regulatory region 517159	1937 bp proximal
Tssr138799	transcription start site region 138799	1116 bp upstream
Tssr138800	transcription start site region 138800	1141 bp upstream
Tssr138801	transcription start site region 138801	1167 bp upstream
Tssr138802	transcription start site region 138802	1211 bp upstream
Tssr141546	transcription start site region 141546	1843 bp downstream
Tssr141547	transcription start site region 141547	1871 bp downstream
Zbtb11	zinc finger and BTB domain containing 11	1213 bp upstream
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	598 bp downstream