rs230753974 SNP Detail

Summary

• ID
  rs230753974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:64477967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGTCAG GCTCATGTAT
  GCAGCAGAGA GGACTCGGAC CAGGTTAGGG AAGTTCAGAT TGTCCCAACA TAGAAGTCAG
  GGAAAGAAAC AGCACACTCA CTGGGTGGTG AGAACGGCTA CTGGTAACAA CTGGTCAAAT
  AGGCTGGGAG TGGCCCAAGA CGGGATCCCG CTGGGCCGTT CTTAGCATCC TGGCCCGAGG
  R
  CAAACTCACG CAGGTCTGAG CACACTTTAT CTGGCTTTGA TCCTCAAGGG TCTCTGCACA
  GTGCACAAAA GCCAACTAGG AGGAACCTCA AGAGCTCCGA AAAGAACCCC TCCCTAGTCC
  ATCGCTTGGT GGAGGAAAAC CGAGACTTTA ACGATGAGGG GTTATTACTA TTATTATCAT
  TATTATTCCC AACGCAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400956023	MGP_WTSI_18_64504550	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	A	A	A	G	G	G	G	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230753974					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	A	A	A	G	G	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400956023	MGP_WTSI_18_64504550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:64477967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10138	CpG island 10138	1492 bp distal
Cpgi10139	CpG island 10139	217 bp proximal
Cpgi10140	CpG island 10140	1036 bp proximal
Gm58415	predicted gene, 58415	147 bp downstream
Onecut2	one cut domain, family member 2	within coordinates
Rr539288	regulatory region 539288	883 bp distal
Rr539289	regulatory region 539289	913 bp proximal
Rr539290	regulatory region 539290	1633 bp proximal
Tssr153659	transcription start site region 153659	910 bp downstream