rs230754873 SNP Detail

Summary

• ID
  rs230754873
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101277183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCGCGCGG TCATCCTCGG GCCGCCCGGC
  TCTGGCAAGG GCACCGTTTG CGAAAGGATC GCCCAGAACT TTGGCCTCCA GCATCTCTCC
  AGCGGCCACT TGTTGCGGGA GAACCTCAAG ACCGGCACGG GTGAGGAGCT AAGGCGGGGG
  S
  AGTGAGGGTA GAGACGAGTC TGGCGGGTTG GTCGGGCCGG GAGCAGGGCG GTCGCGGGCT
  CGGGTCCCCT cggcgccggc gccctgcccc cgcccgcgTG TGCCCGTGCG GGCTTGTACG
  TGCCGCGGCG CATGCAGCCG GCCGCCAGCC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229932	CHEV_4_101092591	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230754873					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101277183 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	Intron
Cpgi14500	CpG island 14500	within coordinates
Gm69573	predicted gene, 69573	within coordinates
Rr596145	regulatory region 596145	657 bp distal
Rr596146	regulatory region 596146	649 bp distal
Rr596147	regulatory region 596147	501 bp proximal
Tssr37989	transcription start site region 37989	654 bp downstream
Tssr37990	transcription start site region 37990	637 bp downstream
Tssr37991	transcription start site region 37991	608 bp downstream
Tssr37992	transcription start site region 37992	254 bp downstream
Tssr37993	transcription start site region 37993	167 bp upstream