rs230754939 SNP Detail

Summary

• ID
  rs230754939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:59935336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAGAGC TGTCCCGCGG
  CCAGGGGCGG CAAGGCGGGA AACACACGCA CACCTGGCTA TAAATTAACA TTGGCTTTAG
  CTGTCGCGCC AATTGGCGCG GCCAGCACCC CCCCCCCAAA AAAAAGCCAG AGGAAAACAG
  AAGCAATACG ACTGGGGGTG GAGGCATTGC AGTTCTTGGG GGCGGGCAAC CTCACTCAGT
  Y
  CTCGATTAAT AGCAAACTAA CAAGACATTT TCAACTGCAA CAGAAGAACC TAGGAATCCG
  GGAAGAGGAA GGGGCCGCGG TTTCTCCGCA AACACCACAG CGATTCCCAG CCAGAGGGGG
  AGGGAGGGGC AGTGGTCAGA AGCCAGCGGC TCTAGCAAGT CCCATTTCCG CTGCTCGGGA
  CTTCTCGCTT TTGTACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403581831	MGP_WTSI_X_58144905	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs230754939					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403581831	MGP_WTSI_X_58144905	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:59935336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22744	CpG island 22744	72 bp proximal
Gm14662	predicted gene 14662	1923 bp upstream
Rr691596	regulatory region 691596	509 bp distal
Rr691597	regulatory region 691597	within coordinates
Rr691598	regulatory region 691598	459 bp proximal
Rr691599	regulatory region 691599	1690 bp proximal
Sox3	SRY (sex determining region Y)-box 3	within coordinates
Tssr5624	transcription start site region 5624	788 bp downstream
Tssr163494	transcription start site region 163494	11 bp upstream
Tssr163495	transcription start site region 163495	295 bp downstream
Tssr163496	transcription start site region 163496	946 bp downstream
Tssr163497	transcription start site region 163497	1707 bp downstream