rs230763556 SNP Detail

Summary

• ID
  rs230763556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116952939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAATTA AATAGGATTA
  AGGACACCTG GAGTGTGGGC GATGTTGAGC TATTGTGTTT TTTTATTATT ATTTTTTTAA
  CCTTCGAGAG TATTGAACCC GTCTTAATCA AGAACAGAGT AATTAAAAAT TTTGAATGCT
  AGGGTTTGGC TTCCGTCTGT GATAAAGTAC GGTTTACATT GCCGAACGCG TTGGTGACTT
  Y
  ATCAGAGCTT GATCCATAAG TTTTTGCTTT TTTGGACTGT CCTTAGGTTT TCCAAATGAA
  TCACCGTGCC TTTTAAATAT TTTGCTTTAA TGTAGCAGCC TCTTGAAGGA ATAATGGGGC
  TGTAAGAGTT TCCTGTTGAG AGTTAATTTG GGGCCGAATT TTGGTGTCTG TTTTTTCTGT
  AATTGAATTC AATTTTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355379030	MGP_WTSI_2_116948194	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230763556					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379030	MGP_WTSI_2_116948194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116952939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	357 bp distal
Gm74661	predicted gene, 74661	1500 bp downstream
Rr367269	regulatory region 367269	1593 bp downstream
Rr397194	regulatory region 397194	352 bp upstream
Rr563062	regulatory region 563062	1971 bp distal
Rr563064	regulatory region 563064	810 bp distal
Rr563065	regulatory region 563065	within coordinates
Spred1	sprouty protein with EVH-1 domain 1, related sequence	within coordinates
Tssr19480	transcription start site region 19480	1704 bp downstream
Tssr19481	transcription start site region 19481	1664 bp downstream
Tssr19482	transcription start site region 19482	1603 bp downstream
Tssr19483	transcription start site region 19483	1576 bp downstream
Tssr19484	transcription start site region 19484	1553 bp downstream
Tssr19485	transcription start site region 19485	1525 bp downstream
Tssr19486	transcription start site region 19486	1460 bp downstream
Tssr19487	transcription start site region 19487	1413 bp downstream
Tssr19488	transcription start site region 19488	1309 bp downstream
Tssr19489	transcription start site region 19489	1281 bp downstream
Tssr19490	transcription start site region 19490	1059 bp downstream
Tssr19491	transcription start site region 19491	985 bp downstream
Tssr19492	transcription start site region 19492	764 bp upstream
Tssr19493	transcription start site region 19493	1080 bp upstream
Tssr25740	transcription start site region 25740	415 bp downstream