rs230770052 SNP Detail

Summary

• ID
  rs230770052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC ATCACCCACC CACCCCCCCC
  M
  CCCCCGCGCG CCTTATCCAT GGCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss914790126	MGP_WTSI_1_91054528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	C	C	C	A	A	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs230770052					SNP	A	A	A	A	A	C	C	C	A	A	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914790126	MGP_WTSI_1_91054528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	800 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1466 bp downstream
Tssr8032	transcription start site region 8032	1336 bp downstream
Tssr8033	transcription start site region 8033	1008 bp downstream
Tssr8034	transcription start site region 8034	996 bp downstream
Tssr8035	transcription start site region 8035	978 bp downstream
Tssr8036	transcription start site region 8036	966 bp downstream
Tssr8037	transcription start site region 8037	536 bp downstream
Tssr12924	transcription start site region 12924	1700 bp upstream
Tssr12925	transcription start site region 12925	1682 bp upstream
Tssr12926	transcription start site region 12926	1656 bp upstream
Tssr12927	transcription start site region 12927	1630 bp upstream
Tssr12928	transcription start site region 12928	1480 bp upstream
Tssr12929	transcription start site region 12929	678 bp upstream
Tssr12930	transcription start site region 12930	1964 bp downstream