rs230779002 SNP Detail

Summary

• ID
  rs230779002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGTC AACCTGTAGT
  GCACTGGTTC TCAACCTTCC TAATGCTGTG ACTCTTTAAT ACATATAGTT CGTGTCCTGG
  TAACACCCAA CCATGAAAAT TATTTATTGC TACTTCATAA CTGTAATTTT GCTACTGTTA
  TGAATAATAA TGTAAATATC TGATAAACAG GACATCTGAT ATACAATCAC AGTGGGGTCA
  S
  GACCCACAGG TTGAGAACCG CTTCTCTAGC CTCATCTAAG TTAGTTTTTA AGTTAGAGTC
  TATCCTTAGC TTAGGGCTCA CCCAATTGGA TGATGCTGCT GGCTATTGAA CCCCAGGAAT
  CGGCCTGTTT CTACTTACCC ATAGTTGGGA TCTTAAGTAC GCACAACCAC ACCTGGCTTC
  TTTCACCGGT TCTGAGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363530413	MGP_WTSI_4_141376021	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	G	G	G	C	G	G	G	C	C	G	G	C	C	C	G	G	G	G	C	G	C	C	G	C	G	G	C	G	G	C	C	C	G	C	G	G	G	C	G	C	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230779002					SNP	C	C	C	C	G	G	G	G	C	G	G	G	C	C	G	G	C	C	C	G	G	G	G	C	G	C	C	G	C	G	G	C	G	G	C	C	C	G	C	G	G	G	C	G	C	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530413	MGP_WTSI_4_141376021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547417 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1029 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	107 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1062 bp downstream
Tssr40109	transcription start site region 40109	1027 bp downstream
Tssr40110	transcription start site region 40110	1004 bp downstream
Tssr40111	transcription start site region 40111	1219 bp upstream
Tssr40112	transcription start site region 40112	1247 bp upstream
Tssr40113	transcription start site region 40113	1276 bp upstream
Tssr40114	transcription start site region 40114	1598 bp upstream
Tssr40115	transcription start site region 40115	1632 bp upstream
Tssr40116	transcription start site region 40116	1672 bp upstream
Tssr44373	transcription start site region 44373	1820 bp upstream
Tssr44374	transcription start site region 44374	974 bp upstream
Tssr44375	transcription start site region 44375	741 bp upstream
Tssr44376	transcription start site region 44376	723 bp upstream
Tssr44377	transcription start site region 44377	114 bp upstream
Tssr44378	transcription start site region 44378	within coordinates
Tssr44379	transcription start site region 44379	1246 bp downstream
Tssr44380	transcription start site region 44380	1258 bp downstream
Tssr44381	transcription start site region 44381	1614 bp downstream
Tssr44382	transcription start site region 44382	1633 bp downstream
Tssr44383	transcription start site region 44383	1684 bp downstream