rs230779343 SNP Detail

Summary

• ID
  rs230779343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCTCTA GTGCCCATGT
  GGACAGGTGG GAACTCTGGC CACAAGGCAT AGCTACACAT CTGGCAGACT CCTCAGACCC
  TGTCTGTGTG TTTGGAGTAT GGAGACCTCA CAACTCTATA CTCAGAACGG TCTTCTCAGC
  CCTATTGACA AGGTGACTTC CCTCTCTCCC CGCTGTCCCT TCTCCCACCC ACTCATCCTC
  Y
  CTCCTGTCCC TCTGAGCTGC AGAGACATGG GATGGAGCTC TGGACAGCTT CTGGAATGTG
  GAGTTAAGGC TCAGCTCTAC CTGCAGGTCC AGTCCCCCAC CCCCACCCCC ACCCCTACCC
  CCACCCCAGG ACCACAGAGC TACAGGACAG GCCAAGGCAA GCTCATTCTA CCTGTCTCTC
  AGGTTGTCAA TGAAGCGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss380952070	MGP_WTSI_10_76187512	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs230779343					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380952070	MGP_WTSI_10_76187512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560601 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	1141 bp distal
Gm48276	predicted gene, 48276	1816 bp downstream
Tssr3254	transcription start site region 3254	1174 bp downstream
Tssr3255	transcription start site region 3255	1431 bp downstream
Tssr3256	transcription start site region 3256	1480 bp downstream
Tssr94201	transcription start site region 94201	1255 bp downstream
Tssr98205	transcription start site region 98205	1328 bp upstream
Tssr98206	transcription start site region 98206	1250 bp upstream
Tssr98207	transcription start site region 98207	1211 bp downstream